Search code examples
Convert a hmmer --tblout output to a pandas dataframe...


pythonpandasdataframebioinformaticsbiopython

Read More
Why does the ProtBERT model generate identical embeddings for all non-whitespace-separated (single t...


pythonnlpbioinformaticshuggingface-transformersbert-language-model

Read More
Is there a way to translate a list of dna sequences into amino acids if the dna sequence is not divi...


pythontranslationbioinformatics

Read More
How do I get the UniprotKB API request results to match the results from Uniprot Website search?...


rgetbioinformatics

Read More
How can I use wildcard paths from a Pandas dataframe as required rule inputs and outputs in Snakemak...


pythonpandaswildcardbioinformaticssnakemake

Read More
Snakemake wildcard issues using touch() to avoid premature pipeline progression...


pythonwildcardbioinformaticssnakemake

Read More
Residues size differ from position in BioPython...


bioinformaticsbiopythonprotein-database

Read More
DNA to Protein | translation incorrection...


pythondictionarytextbioinformaticsdna-sequence

Read More
How to Iterate over molecules in PyMol?...


bioinformaticschemistrypymol

Read More
How to concatenate files that have the same beginning of a name?...


regexloopsunixbioinformatics

Read More
How to output results of 'msa' package in R to fasta...


ralignmentbioinformaticsfasta

Read More
How do I loop through mgz files and convert them to nii files using a shell script and freesurfer?...


linuxbashshellbioinformatics

Read More
Can you color branch lines in a tree based on node data? (ggtree)...


rbioinformaticsphylogenyggtreeape

Read More
Getting namespace from a obo-formatted text file...


runixbioinformaticsgenetics

Read More
determine position of an inserted string within another...


pythonstringbioinformaticsbiopythonfasta

Read More
how to randomly add a list of sequences into a text body...


pythonstringbioinformaticsbiopythonfasta

Read More
Cannot run ProtNLM from Uniprot with Tensorflow in colab notebook...


pythontensorflowbioinformatics

Read More
fastqc and trimming for rnseq data...


bioinformaticssnakemakerna-seq

Read More
Problems installing with conda under MacOS 14.1 M1...


macoscondabioinformaticsapple-m1bioconda

Read More
TypeError: 'Seq' object does not support item assignment...


pythonbioinformaticsbiopython

Read More
How to subset a nextflow channel using another channel containing only one unknown value...


filtergroovybioinformaticschannelnextflow

Read More
Snakemake: Rule is not picked up...


pythonbashpipelinebioinformaticssnakemake

Read More
Performance issue using HPX for parallelization in C++ code...


c++performanceparallel-processingbioinformaticshpx

Read More
How to fix the error: Not a valid PublishDir entry [org.codehaus.groovy.runtime.GStringImpl]...


bioinformaticsnextflowbowtie2

Read More
Automation for paired end reads with Cutadapt...


bioinformatics

Read More
netEmbedding() Function in CellChat - UMAP not recognized...


rbioinformaticsreticulate

Read More
Filter a .fasta file...


bashfilterbioinformaticsfasta

Read More
Nextflow pipeline: Accessing files from a channel when handling single and multiple inputs...


bioinformaticsnextflow

Read More
Using Bio.SeqIO to write single-line FASTA...


pythonpython-2.7bioinformaticsbiopythonfasta

Read More
Using Biopython (Python) to extract sequence from FASTA file...


pythonpython-2.7bioinformaticsbiopythonfasta

Read More
BackNext