Search code examples
Zip input and output without wildcards, using absolute paths...


pythonsnakemake

Read More
Awk return success code on exit to snakemake...


awksnakemake

Read More
How to debug scripts for PyPSA-EUR?...


pythonsnakemakepypsa

Read More
Using a function to set log file id with snakemake...


pythonsnakemake

Read More
snakemake - specifying memory in resources directive vs. command-line call for individual rule...


pythonsnakemakehpc

Read More
Snakemake not re-running workflow or rule after script update...


snakemake

Read More
Snakemake rerun triggers not causing dependent steps to be rerun...


snakemake

Read More
Creating conda environment in snakemake rule...


condasnakemake

Read More
Snakemake : How to tranverse DAG depth-first with aggregate rule at the end?...


pythonsnakemake

Read More
How to run a rule with the working dir being the local storage prefix?...


snakemake

Read More
Access Profile Information in Snakemake Rule...


snakemake

Read More
Snakemake: adapt the pipeline to the new version 8.18.1 (example of combining checkpoint use inside ...


snakemake

Read More
snakemake InputFunctionException in rule KeyError...


pythonsnakemake

Read More
snakemake cluster script ImportError snakemake.utils...


pythoncondahpcsnakemakepbs

Read More
snakemake: MissingOutputException in rule hifiasm in file /home/usr/path/to/Snakefile, line 13...


pythonpipelinebioinformaticssnakemake

Read More
How to obtain syntax highlight/coloring for Snakemake file?...


pythonsnakemake

Read More
Snakemake: opening relative Github files in Snakemake modules OUTSIDE rules...


pythonsnakemakepypsa

Read More
Snakemake Stripping Trailing Slash From Input...


pythonsnakemake

Read More
What is the encoding of this SHA256 hash in the Snakemake documentation?...


pythonsha256snakemake

Read More
Snakemake checkpoint is not evaluated...


snakemake

Read More
Using Module in Snakemake. Define a rule after a use rule * from workflow throw an error...


pythonmoduleattributeerrorsnakemakemodularization

Read More
If else for "temp" in snakemake...


unixbioinformaticssnakemake

Read More
Snakemake rule fails after doing only 1 job - Sortmerna...


condabioinformaticssnakemake

Read More
Why won't snakemake re-run workflow if I touch the input file with size less than 100,000 bytes?...


pythonpipelineworkflowsnakemake

Read More
How Do I Combine Parameters Conditionally?...


snakemake

Read More
How to log time duration (for each job and total) for a snakemake workflow?...


snakemakepypsa

Read More
Manage the wrappers in Snakemake...


wrappersnakemake

Read More
Snakemake running as an AWS Batch or an AWS Fargate task raises MissingInputException on the inputs ...


amazon-s3aws-fargatesnakemakeaws-batch

Read More
Multiple variables in input and output using wildcards snakemake...


ubuntuunixcommand-line-interfacebioinformaticssnakemake

Read More
How to enable "output" to detect variables in "run" in snakemake...


ubuntubioinformaticssnakemake

Read More
BackNext